Program
| When | Who | What | Where |
|---|---|---|---|
| 09:45-10:00 | Tzviya, Ludo, Arjen |
Welcome | UL, Gorlaeus BM 1.26 |
| 10:00-11:00 | Ali Gheidari TU Delft |
Introduction to Electron Optics | UL, Gorlaeus BM 1.26 |
| 11:00-12:00 | Oliver Raschdorf Thermo Fisher Scientific |
Energy filters and detectors | UL, Gorlaeus BM 1.26 |
| 12:00-13:00 | Lunch break | ||
| 13:00-13:20 | Willem Noteborn Leiden University |
Facility tour | UL, Gorlaeus NeCEN |
| 13:20-15:15 | Practical session Willem Noteborn (NeCEN) & Wen Yang (TFS) |
Microscope alignement and session setup | UL, Gorlaeus NeCEN |
| 15:15-15:35 | Coffee & Break(ing Questions) | ||
| 15:35-17:00 | Practical session Willem Noteborn (NeCEN) & Wen Yang (TFS) |
Microscope alignement and session setup | UL, Gorlaeus NeCEN |
| 17:00-17:05 | All | Walk to Lecture room (BM 1.26) | |
| 17:05-17:50 | Course Participants | Flash talks (Group I) | UL, Gorlaeus BM 1.26 |
| When | Who | What | Where |
|---|---|---|---|
| 09:55-10:00 | Tzviya/Ludo/Arjen |
Session introduction | UL, Gorlaeus BM 1.26 |
| 10:00-11:00 | Willem Noteborn NeCEN |
Introduction to cryo-EM sample preparation | UL, Gorlaeus BM 1.26 |
| 11:00-11:15 | Coffee break | ||
| 11:15-12:15 | Wim Hagen Thermo Fisher Scientific |
Best practices for SPA data collection | UL, Gorlaeus BM 1.26 |
| 12:15-13:00 | Lunch break | ||
| 13:00-14:15 | Practical session Willem Noteborn (NeCEN) & Wen Yang (TFS) |
SPA data collection | UL, Gorlaeus NeCEN |
| 14:15-14:35 | Coffee & Break(ing Questions) | ||
| 14:35-15:50 | Practical session Willem Noteborn (NeCEN) & Wen Yang (TFS) |
SPA data collection | UL, Gorlaeus NeCEN |
| 16:50-17:00 | All | Walk to Lecture room (BM 1.26) | |
| 16:00-17:00 | Beata Turonova MPI Biophysics, Frankfurt |
Introduction to cryo-ET | UL, Gorlaeus BM 1.26 |
| 17:00-17:05 | short break | ||
| 17:05-17:50 | Course Participants | Flash talks (Group II) | UL, Gorlaeus BM 1.26 |
| When | Who | What | Where |
|---|---|---|---|
| 09:55-10:00 | Tzviya/Ludo/Arjen |
Session introduction | UL, Gorlaeus BM 1.26 |
| 10:00-11:00 | Wim Hagen Thermo Fisher Scientific |
Best practices for tilt series data colelction | UL, Gorlaeus BM 1.26 |
| 11:00-11:15 | Coffee break | ||
| 11:15-12:00 | Beata Turonova MPI Biophysics, Frankfurt |
Analysis of cryo-ET tomograms | UL, Gorlaeus BM 1.26 |
| 12:00-12:45 | Lunch break | ||
| 12:45-13:30 | Stuart Howes Utrecht University |
Focused Ion Beam (FIB) milling | UL, Gorlaeus BM 1.26 |
| 13:30-14:30 | Rainer Kaufmann University of Hamburg |
Correlative Light and Electron Microscopy | UL, Gorlaeus BM 1.26 |
| 14:30-15:50 | Practical session Willem Noteborn (NeCEN) & Wen Yang (TFS) |
Cryo-ET data collection | UL, Gorlaeus NeCEN |
| 15:50-16:10 | Coffee & Break(ing Questions) | ||
| 16:10-17:50 | Practical session Willem Noteborn (NeCEN) & Wen Yang (TFS) |
Cryo-ET data collection | UL, Gorlaeus NeCEN |
| When | Who | What | Where |
|---|---|---|---|
| 09:55-10:00 | Tzviya/Ludo/Arjen |
Session introduction | TUD, Bld. 58 58.A.100 |
| 10:00-11:00 | Matt Iadanza MRC-LMB |
Introduction to Single-Particle Analysis | TUD, Bld. 58 58.A.100 |
| 11:00-11:15 | Coffee break | ||
| 11:15-12:15 | Matt Iadanza MRC-LMB |
Heterogeneous reconstruction in SPA | TUD, Bld. 58 58.A.100 |
| 12:15-12:45 | Tom Burnley UKRI-STFC |
Introduction to CCP-EM Doppio | TUD, Bld. 58 58.A.100 |
| 12:45-13:15 | Lunch break | ||
| 13:15-15:30 | Practical session Matt Iadanza & Joel Greer (UKRI-STFC) |
SPA data processing | TUD, Bld. 58 58.A.100 |
| 15:30-16:00 | Coffee & Break(ing Questions) | ||
| 16:00-18:30 | Practical session Matt Iadanza & Joel Greer (UKRI-STFC) |
SPA data processing | TUD, Bld. 58 58.A.100 |
| 18:30-21:30 | Course dinner | Restaurant Boterhuis, Delft |
| When | Who | What | Where |
|---|---|---|---|
| 09:55-10:00 | Tzviya/Ludo/Arjen |
Session introduction | TUD, Bld. 58 58.A.100 |
| 10:00-11:00 | Bogdan Toader MRC-LMB |
Introduction to Subtomogram Averaging | TUD, Bld. 58 58.A.100 |
| 11:00-11:15 | Coffee break | ||
| 11:15-12:45 | Practical session Bogdan Toader (MRC-LMB) & Rangana Warshamanage (UKRI-STFC) |
STA data processing | TUD, Bld. 58 58.A.100 |
| 12:45-13:30 | Lunch break | ||
| 13:30-15:30 | Practical session Bogdan Toader (MRC-LMB) & Rangana Warshamanage (UKRI-STFC) |
STA data processing | TUD, Bld. 58 58.A.100 |
| 15:30-16:00 | Coffee & Break(ing Questions) | ||
| 16:00-18:00 | Practical session Bogdan Toader (MRC-LMB) & Rangana Warshamanage (UKRI-STFC) |
STA data processing | TUD, Bld. 58 58.A.100 |
| When | Who | What | Where |
|---|---|---|---|
| 09:55-10:00 | Tzviya/Ludo/Arjen |
Session introduction | TUD, Bld. 58 58.A.100 |
| 10:00-11:00 | Tom Burnley UKRI-STFC |
Atomic model building tools in CCP-EM | TUD, Bld. 58 58.A.100 |
| 11:00-11:30 | Arjen Jakobi TU Delft |
Map sharpening & filtering | TUD, Bld. 58 58.A.100 |
| 11:30-13:00 | Practical session Arjen Jakobi (TU Delft) & Tom Burnley (UKRI-STFC) |
Model building & Refinement | TUD, Bld. 58 58.A.100 |
| 13:00-13:30 | Lunch break | ||
| 13:30-16:00 | Practical session Arjen Jakobi (TU Delft) & Tom Burnley (UKRI-STFC) |
Model building & Refinement | TUD, Bld. 58 58.A.100 |